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Ochoa-Fernandez R, Abel NB, Wieland FG, Schlegel J, Koch LA, Miller JB, Engesser R, Giuriani G, Brandl SM, Timmer J, Weber W, Ott T, Simon R, Zurbriggen MD. Optogenetic control of gene expression in plants in the presence of ambient white light. Nat Methods. 2020 Jul;17(7):717-725. PubMed

Schmidt, S. M.; Belisle, M.; Frommer, W. B. The evolving landscape around genome editing in agriculture. EMBO Rep. 2020, 21 (6). https://doi.org/10.15252/embr.202050680

Berckmans B, Kirschner G, Gerlitz N, Stadler R, Simon R. CLE40 Signaling Regulates Root Stem Cell Fate. Plant Physiol. 2020 Apr;182(4):1776-1792. PubMed

Denay G, Schultz P, Hänsch S, Weidtkamp-Peters S, Simon R. Over the rainbow: A practical guide for fluorescent protein selection in plant FRET experiments. Plant Direct. 2019 Dec 6;3(12):e00189. PubMed

Schaffer M, Pfeffer S, Mahamid J, Kleindiek S, Laugks T, Albert S, Engel BD, Rummel A, Smith AJ, Baumeister W, Plitzko JM. A cryo-FIB lift-out technique enables molecular-resolution cryo-ET within native Caenorhabditis elegans tissue. Nat Methods. 2019 Aug;16(8):757-762.  PubMed

Bezrutczyk, M.; Yang, J.; Eom, J.-S.; Prior, M.; Sosso, D.; Hartwig, T.; Szurek, B.; Oliva, R.; Vera-Cruz, C.; White, F. F.; Yang, B.; Frommer, W. B. Sugar Flux and Signaling in Plant-Microbe Interactions. Plant J. 2018, 93 (4), 675–685. https://doi.org/10.1111/tpj.13775.

Mosalaganti S, Kosinski J, Albert S, Schaffer M, Strenkert D, Salomé PA, Merchant SS, Plitzko JM, Baumeister W, Engel BD, Beck M. In situ architecture of the algal nuclear pore complex. Nat Commun. 2018 Jun 18;9(1):2361. PubMed 

Schaffer M, Mahamid J, Engel BD, Laugks T, Baumeister W, Plitzko JM. Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins. J Struct Biol. 2017 Feb;197(2):73-82. PubMed

Long Y, Stahl Y, Weidtkamp-Peters S, Postma M, Zhou W, Goedhart J, Sánchez-Pérez MI, Gadella TWJ, Simon R, Scheres B, Blilou I. In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots. Nature. 2017 Aug 3;548(7665):97-102. PubMed

Somssich M, Simon R. Studying Protein-Protein Interactions In Planta Using Advanced Fluorescence Microscopy. Methods Mol Biol. 2017;1610:267-285.  PubMed

Rizza A, Walia A, Lanquar V, Frommer WB, Jones AM. In vivo gibberellin gradients visualized in rapidly elongating tissues. Nat Plants. 2017 Oct;3(10):803-813. PubMed

Hanemian M, Barlet X, Sorin C, Yadeta KA, Keller H, Favery B, Simon R, Thomma BP, Hartmann C, Crespi M, Marco Y, Tremousaygue D, Deslandes L. Arabidopsis CLAVATA1 and CLAVATA2 receptors contribute to Ralstonia solanacearum pathogenicity through a miR169-dependent pathway. New Phytol. 2016 Jul;211(2):502-15. PubMed

Schardon K, Hohl M, Graff L, Pfannstiel J, Schulze W, Stintzi A, Schaller A. Precursor processing for plant peptide hormone maturation by subtilisin-like serine proteinases. Science. 2016 Dec 23;354(6319):1594-1597. PubMed

 

Chen LQ, Lin IW, Qu XQ, Sosso D, McFarlane HE, Londoño A, Samuels AL4, Frommer WB1. A cascade of sequentially expressed sucrose transporters in the seed coat and endosperm provides nutrition for the Arabidopsis embryo. Plant Cell. 2015;27(3):607-19. PubMed

Somssich M, Ma Q, Weidtkamp-Peters S, Stahl Y, Felekyan S, Bleckmann A, Seidel CA, Simon R. Real-time dynamics of peptide ligand-dependent receptor complex formation in planta. Sci Signal. 2015 Aug 4;8(388):ra76.  PubMed

Hu Y, Zhang J, Jia H, Sosso D, Li T, Frommer WB, Yang B, White FF, Wang N, Jones JB. Lateral organ boundaries 1 is a disease susceptibility gene for citrus bacterial canker disease. Proc Natl Acad Sci U S A. 2014;111(4):E521-9. PubMed

Cohn M, Bart RS, Shybut M, Dahlbeck D, Gomez M, Morbitzer R, Hou BH, Frommer WB, Lahaye T, Staskawicz BJ. Xanthomonas axonopodis virulence is promoted by a transcription activator-like effector-mediated induction of a SWEET sugar transporter in cassava. Mol Plant Microbe Interact. 2014;27(11):1186-98. PubMed

Xu Y, Tao Y, Cheung LS, Fan C, Chen LQ, Xu S, Perry K, Frommer WB7, Feng L. Structures of bacterial homologues of SWEET transporters in two distinct conformations. Nature. 2014;515(7527):448-52. PubMed

Zhou H, Liu B, Weeks DP, Spalding MH, Yang B. Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice. Nucleic Acids Res. 2014;42(17):10903-14.
PubMed

Richter A, Streubel J, Blücher C, Szurek B, Reschke M, Grau J, Boch J. A TAL effector repeat architecture for frameshift binding. Nat Commun. 2014 Mar11;5:3447. doi: 10.1038/ncomms4447.
PubMed

Jiang W, Zhou H, Bi H, Fromm M, Yang B, Weeks DP. Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice. Nucleic Acids Res. 2013;41(20):e188. PubMed

Jones AM, Grossmann G, Danielson JÅ, Sosso D, Chen LQ, Ho CH, Frommer WB. In vivo biochemistry: applications for small molecule biosensors in plant biology. Curr Opin Plant Biol. 2013;16(3):389-95. PubMed

Noël LD, Denancé N, Szurek B. Predicting promoters targeted by TAL effectors in plant genomes: from dream to reality. Front Plant Sci. 2013 Sep 3;4:333. doi: 10.3389/fpls.2013.00333. eCollection 2013. PubMed PMID: 24027573; PubMed Central PMCID: PMC3759964.

Streubel J, Pesce C, Hutin M, Koebnik R, Boch J, Szurek B. Five phylogenetically close rice SWEET genes confer TAL effector-mediatedsusceptibility to Xanthomonas oryzae pv. oryzae. New Phytol. 2013Nov;200(3):808-19. doi: 10.1111/nph.12411. Epub 2013 Jul 24. PubMed

Pérez-Quintero AL, Rodriguez-R LM, Dereeper A, López C, Koebnik R, Szurek B, Cunnac S. An improved method for TAL effectors DNA-binding sites predictionreveals functional convergence in TAL repertoires of Xanthomonas oryzae strains. PLoS One. 2013 Jul 15;8(7):e68464. doi: 10.1371/journal.pone.0068464. Print 2013. PubMed

Robin GP, Ortiz E, Szurek B, Brizard JP, Koebnik R. Comparative proteomicsreveal new HrpX-regulated proteins of Xanthomonas oryzae pv. oryzae. JProteomics. 2014 Jan 31;97:256-64. doi: 10.1016/j.jprot.2013.04.010. Epub 2013Apr 18. PubMed

Zhao S, Mo WL, Wu F, Tang W, Tang JL, Szurek B, Verdier V, Koebnik R, FengJX. Identification of non-TAL effectors in Xanthomonas oryzae pv. oryzae Chinese strain 13751 and analysis of their role in the bacterial virulence. World JMicrobiol Biotechnol. 2013 Apr;29(4):733-44. doi: 10.1007/s11274-012-1229-5. Epub2013 Jan 8. PubMed

Chen LQ, Qu XQ, Hou BH, Sosso D, Osorio S, Fernie AR, Frommer WB. Sucrose efflux mediated by SWEET proteins as a key step for phloem transport. Science. 2012;335(6065):207-11. PubMed

Schulze WX, Sanggaard KW, Kreuzer I, Knudsen AD, Bemm F, Thøgersen IB, Bräutigam A, Thomsen LR, Schliesky S, Dyrlund TF, Escalante-Perez M, Becker D, Schultz J, Karring H, Weber A, Højrup P, Hedrich R, Enghild JJ. The protein composition of the digestive fluid from the venus flytrap sheds light on prey digestion mechanisms. Mol Cell Proteomics. 2012 Nov;11(11):1306-19. PubMed

Chaudhuri B, Hörmann F, Frommer WB. Dynamic imaging of glucose flux impedance using FRET sensors in wild-type Arabidopsis plants. J Exp Bot. 2011 Apr;62(7):2411-7. PubMed

Hou BH, Takanaga H, Grossmann G, Chen LQ, Qu XQ, Jones AM, Lalonde S, Schweissgut O, Wiechert W, Frommer WB. Optical sensors for monitoring dynamic changes of intracellular metabolite levels in mammalian cells. Nat Protoc. 2011 Oct 27;6(11):1818-33. PubMed

Bermejo C, Haerizadeh F, Takanaga H, Chermak D, Frommer WB. Optical sensors for measuring dynamic changes of cytosolic metabolite levels in yeast. Nat Protoc. 2011 Oct 27;6(11):1806-17. PubMed

Schulze WX, Usadel B. Quantitation in mass-spectrometry-based proteomics. Annu Rev Plant Biol. 2010;61:491-516. PubMed

Robinson CV, Sali A, Baumeister W. The molecular sociology of the cell. Nature. 2007 Dec 13;450(7172):973-82. PubMed

Schulze WX, Deng L, Mann M. Phosphotyrosine interactome of the ErbB-receptor kinase family. Mol Syst Biol. 2005;1:2005.0008. PubMed

Schulze WX, Mann M. A novel proteomic screen for peptide-protein interactions. J Biol Chem. 2004 Mar 12;279(11):10756-64. PubMed

Lalonde S, Weise A, Walsh RP, Ward JM, Frommer WB. Fusion to GFP blocks intercellular trafficking of the sucrose transporter SUT1 leading to accumulation in companion cells. BMC Plant Biol. 2003 Dec 11;3:8. PubMed

Sali A, Glaeser R, Earnest T, Baumeister W. From words to literature in structural proteomics. Nature. 2003 Mar 13;422(6928):216-25.  PubMed

Schulze WX, Reinders A, Ward J, Lalonde S, Frommer WB. Interactions between co-expressed Arabidopsis sucrose transporters in the split-ubiquitin system. BMC Biochem. 2003 Mar 18;4:3.  PubMed

Weise A, Barker L, Kühn C, Lalonde S, Buschmann H, Frommer WB, Ward JM. A new subfamily of sucrose transporters, SUT4, with low affinity/high capacity localized in enucleate sieve elements of plants. Plant Cell. 2000 Aug;12(8):1345-55. PubMed

Schulze W, Weise A, Frommer WB, Ward JM. Function of the cytosolic N-terminus of sucrose transporter AtSUT2 in substrate affinity. FEBS Lett. 2000 Nov 24;485(2-3):189-94.  PubMed

Kühn C, Franceschi VR, Schulz A, Lemoine R, Frommer WB. Macromolecular trafficking indicated by localization and turnover of sucrose transporters in enucleate sieve elements. Science. 1997 Feb 28;275(5304):1298-300. PubMed

Seemüller E, Lupas A, Stock D, Löwe J, Huber R, Baumeister W. Proteasome from Thermoplasma acidophilum: a threonine protease. Science. 1995 Apr 28;268(5210):579-82.  PubMed

Schulze W, Schulze E-. Insect capture and growth of the insectivorous Drosera rotundifolia L. Oecologia. 1990 Mar;82(3):427-429. PubMed

 

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